Ye Lab@
Department of Molecular Bioscience
Conformation, Dynamics, and Signal Transduction of GPCR
2. Drug Development Platforms for GPCR
My lab develops novel GPCR ligand libraries by integrating CRISPR/Cas9, yeast-surface display, and ligand-based NMR approaches. This has led to a patent filing, despite the related work still ongoing. A set of GPCRs associated with diabetes/obesity, infectious diseases, cancers, analgesics, and neurodegenerative diseases are lined up for drug screening or design using these upcoming platforms in collaboration with several pharmaceutical companies.
a. A high-throughput NMR approach for in-membrane protein ligand screening
Conventional approaches to studying ligand-receptor interactions using solution-state NMR often involve laborious sample preparation, isotopic labeling, and receptor reconstitution. Each of these steps remains challenging for membrane proteins such as GPCRs. Thus, we introduce a combinational approach integrating NMR and homogenized membrane nano-discs preparation to characterize the ligand-GPCR interactions. The approach will have great potential for drug screening as it benefits from minimal receptor preparation, minimizing non-specific binding. In addition, the approach maintains receptor structural heterogeneity essential for functional diversity, making it feasible to probe a more reliable ligand-GPCR interaction that is vital for faithful ligand discovery.
b. CRISPR/Cas- and DNA- based ligand libraries
My lab is also establishing both small molecular and protein-based ligand libraries for GPCRs using CRISPR/Cas- and DNA-based strategies for new drug explorations.